Selected Qbeta replicase references

Selected Qbeta replicase references

Paradoxes of replication of RNA of a bacterial virus
Chetverin, AB, Molecular Biology 45, 139-149 (2011)

Identification of Two Forms of Q beta Replicase with Different Thermal Stabilities but Identical RNA Replication Activity
Ichihashi N, Matsuura T, Hosoda K, et al. JOURNAL OF BIOLOGICAL CHEMISTRY 285, 37210-37217 (2010)

Structure of the Q beta replicase, an RNA-dependent RNA polymerase consisting of viral and host proteins
Kidmose RT, Vasiliev NN, Chetverin AB, et al PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 107, 10884-10889 (2010)

Functional circularity of legitimate Q beta replicase templates
Ugarov VI, Chetverin AB, JOURNAL OF MOLECULAR BIOLOGY 379, 414-427 (2008)

Kinetic analysis of the entire RNA amplification process by Q beta replicase
Hosoda K, Matsuura T, Kita H, et al., JOURNAL OF BIOLOGICAL CHEMISTRY 282 (21) 15516-15527 (2007)

Structure and function of RNA replication
Ortin J, Parra F, ANNUAL REVIEW OF MICROBIOLOGY 60, 305-326 (2006)

What is a quasispecies?
Biebricher CK, Eigen M, QUASISPECIES: CONCEPT AND IMPLICATIONS FOR VIROLOGY 299, 1-31 (2006)

Initiation of viral RNA-dependent RNA polymerization
van Dijk AA, Makeyevt EV, Bamford DH, JOURNAL OF GENERAL VIROLOGY 85, 1077-1093, Part 5 (2004)

Q beta replicase discriminates between legitimate and illegitimate templates by having different mechanisms of initiation
Ugarov VI, Demidenko AA, Chetverin AB, JOURNAL OF BIOLOGICAL CHEMISTRY 278 (45), 44139-44146 (2003)

A cryptic lysis gene near the start of the Q beta replicase gene in the+1 frame
Nishihara T, Morisawa H, Ohta N, et al., GENES TO CELLS 9 (10) 877-889 (2004)

Kinetic properties of Q beta replicase, an RNA dependent RNA polymerase
Nakaishi T, Iio K, Yamamoto K, et al. JOURNAL OF BIOSCIENCE AND BIOENGINEERING 93 (3) 322-327 (2002)

Autonomous role of 3 '-terminal CCCA in directing transcription of RNAs by Q beta replicase
Tretheway DM, Yoshinari S, Dreher TW JOURNAL OF VIROLOGY 75 (23) 11373-11383 (2001)

RNA species that replicate with DNA-dependent RNA polymerase from Escherichia coli
Wettich A, Biebricher CK, BIOCHEMISTRY 40 (11) 3308-3315 (2001)

Phylogeny, genome evolution, and host specificity of single-stranded RNA bacteriophage (family Leviviridae)
Bollback JP, Huelsenbeck JP JOURNAL OF MOLECULAR EVOLUTION 52 (2) 117-128 (2001)

Polymerization of nontemplate bases before transcription initiation at the 3 ' ends of templates by an RNA-dependent RNA polymerase: An activity involved in 3 ' end repair of viral RNAs
Guan HC, Simon AE, PNAS 97 (23) 12451-12456 (2000)

Internal and 3' RNA initiation by q beta replicase directed by CCA boxes
Yoshinari S, Dreher TW VIROLOGY 271 (2) 363-370 (2000)

CCA initiation boxes without unique promoter elements support in vitro transcription by three viral RNA-dependent RNA polymerases
Yoshinari S, Nagy PD, Simon AE, et al. RNA 6 (5) 698-707 (2000)

Synergism of mutations in bacteriophage Q beta RNA affecting host factor dependence of Q beta replicase
Schuppli D, Georgijevic J, Weber H JOURNAL OF MOLECULAR BIOLOGY 295 (2) (149-154) (2000)

A long-range pseudoknot in Q(beta) RNA is essential for replication
Klovins J, van Duin J, JOURNAL OF MOLECULAR BIOLOGY 294 (4) 875-884 (1999)

RNA elements required for RNA recombination function as replication enhancers in vitro and in vivo in a plus-strand RNA virus
Author(s): Nagy PD, Pogany J, Simon AE EMBO JOURNAL 18 (20) 5653-5665 (1999)

A branched stem-loop structure in the M-site of bacteriophage Q beta RNA is important for template recognition by Q beta replicase holoenzyme
Author(s): Schuppli D, Miranda G, Qiu S, et al. JOURNAL OF MOLECULAR BIOLOGY 283 (3) 585-593 (1998)

Switch from translation to RNA replication in a positive-stranded RNA virus
Gamarnik AV, Andino R GENES & DEVELOPMENT 12 (15) 2293-2304 (1998)

A long-range interaction in Q(beta) RNA that bridges the thousand nucleotides between the M-site and the 3 ' end is required for replication
Klovins J, Berzins V, Van Duin J RNA 4 (8) 948-957 (1998)

The natural 6 S RNA found in Q beta-infected cells is derived from host and phage RNA
Avota E, Berzins V, Grens E, et al. JOURNAL OF MOLECULAR BIOLOGY 276 (1) 7-17 (1998)

Probing RNA-protein interactions using pyrene-labeled oligodeoxynucleotides: Q beta replicase efficiently binds small RNAs by recognizing pyrimidine residues
Preuss R, Dapprich J, Walter NG JOURNAL OF MOLECULAR BIOLOGY 273 (3) 600-613 (1997)

Rescue of the RNA phage genome from RNase III cleavage
Klovins J, vanDuin J, Olsthoorn RCL NUCLEIC ACIDS RESEARCH 25 (21) 4201-4208 (1997)

Molecular evolution of RNA in vitro
Biebricher CK, Gardiner WC BIOPHYSICAL CHEMISTRY 66 (2-3) 179-192 (1997)

Machines for automated evolution experiments in vitro based on the serial-transfer concept
Strunk G, Ederhof T BIOPHYSICAL CHEMISTRY 66 (2-3) 193-202 (1997)

Deletion analysis of Q beta replicase - Participation of the carboxyl-terminal region of the beta-subunit protein in template recognition
Inokuchi Y, Kajitani M JOURNAL OF BIOLOGICAL CHEMISTRY 272 (24) 15339-15345 (1997)

Recognition of bacteriophage Q beta plus strand RNA as a template by Q beta replicase: Role of RNA interactions mediated by ribosomal proteins S1 and host factor
Miranda G, Schuppli D, Barrera I, et al. JOURNAL OF MOLECULAR BIOLOGY 267 (5) 1089-1103 (1997)

Cell-free system for RNA amplification, expression, and cloning (A short review)
Chetverin AB MOLECULAR BIOLOGY 30 (5) 579-584 Part 1 (1996)

Evolutionary reconstruction of a hairpin deleted from the genome of an RNA virus
Olsthoorn RCL, vanDuin J PNAS 93 (22) 12256-12261 (1996)

RNA replication by Q beta replicase: A working model
Brown D, Gold L PNAS 93 (21) 11558-11562 (1996)

Template-free generation of RNA species that replicate with bacteriophage T7 RNA polymerase
Biebricher CK, Luce R EMBO JOURNAL 15 (13) 3458-3465 (1996)

Extremely sensitive, background-free gene detection using binary probes and Q beta replicase
Tyagi S, Landegren U, Tazi M, et al. PNAS 93 (11) 5395-5400 (1996)

Random removal of inserts from an RNA genome: Selection against single-stranded RNA
Olsthoorn RCL, vanDuin J JOURNAL OF VIROLOGY 70 (2) 729-736 (1996)

Significance of strand configuration in self-replicating RNA molecules Davis BK PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES 350 (1334) 345-352 (1995)

TEMPLATE RECOGNITION BY AN RNA-DEPENDENT RNA-POLYMERASE - IDENTIFICATION AND CHARACTERIZATION OF 2 RNA-BINDING SITES ON Q-BETA REPLICASE
BROWN D, GOLD L BIOCHEMISTRY 34 (45) 14765-14774 (1995)

SELECTION AND CHARACTERIZATION OF RNAS REPLICATED BY Q-BETA REPLICASE
BROWN D, GOLD L BIOCHEMISTRY 34 (45) 14775-14782 (1995)

THE MUTANT DISTRIBUTION OF AN RNA SPECIES REPLICATED BY Q-BETA REPLICASE
ROHDE N, DAUM H, BIEBRICHER CK JOURNAL OF MOLECULAR BIOLOGY 249 (4) 754-762 (1995)

STABILITY OF REPLICATIVE FORM AND FITNESS AMONG RNA VARIANTS TRANSCRIBED BY Q-BETA REPLICASE
DAVIS BK
PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES 260 (1357) 39-43 (1995)

DESIGN OF ARTIFICIAL SHORT-CHAINED RNA SPECIES THAT ARE REPLICATED BY Q-BETA REPLICASE
ZAMORA H, LUCE R, BIEBRICHER CK BIOCHEMISTRY 34 (4) 1261-1266 (1995)

A STUDY ON THE FUNCTION OF THE GLYCINE RESIDUE IN THE YGDD MOTIF OF THE RNA-DEPENDENT RNA-POLYMERASE BETA-SUBUNIT FROM RNA COLIPHAGE Q-BETA
INOKUCHI Y, KAJITANI M, HIRASHIMA A JOURNAL OF BIOCHEMISTRY 116 (6) 1275-1280 (1994)

EVOLUTION OF HOST-CELL RNA INTO EFFICIENT TEMPLATE RNA BY Q-BETA REPLICASE - THE ORIGIN OF RNA IN UNTEMPLATED REACTIONS
MOODY MD, BURG JL, DIFRANCESCO R, et al. BIOCHEMISTRY 33 (46) 13836-13847 (1994)

IDENTIFICATION OF RECOGNITION ELEMENTS ON BACTERIOPHAGE-Q-BETA MINUS-STRAND RNA THAT ARE ESSENTIAL FOR TEMPLATE ACTIVITY WITH Q-BETA-REPLICASE
Author(s): SCHUPPLI D, BARRERA I, WEBER H JOURNAL OF MOLECULAR BIOLOGY 243 (5) 811-815 (1994)

THE ROLE OF RNA STRUCTURE IN RNA REPLICATION
BIEBRICHER CK BERICHTE DER BUNSEN-GESELLSCHAFT-PHYSICAL CHEMISTRY CHEMICAL PHYSICS 98 (9) 1122-1126 (1994)

DIFFERENT MECHANISMS OF RECOGNITION OF BACTERIOPHAGE Q-BETA PLUS AND MINUS-STRAND RNAS BY Q-BETA REPLICASE
BARRERA I, SCHUPPLI D, SOGO JM, et al. JOURNAL OF MOLECULAR BIOLOGY 232 (2) 512-521 (1993)

CLONING OF RNA MOLECULES INVITRO
CHETVERINA HV, CHETVERIN AB NUCLEIC ACIDS RESEARCH 21 (10) 2349-2353 (1993)

TEMPLATE-DIRECTED AND TEMPLATE-FREE RNA-SYNTHESIS BY Q-BETA REPLICASE
BIEBRICHER CK, EIGEN M, MCCASKILL JS JOURNAL OF MOLECULAR BIOLOGY 231 (2) 175-179 (1993)

SEQUENCE-ANALYSIS OF RNA SPECIES SYNTHESIZED BY Q-BETA REPLICASE WITHOUT TEMPLATE
BIEBRICHER CK, LUCE R BIOCHEMISTRY 32 (18) 4848-4854 (1993)

INVITRO RECOMBINATION AND TERMINAL ELONGATION OF RNA BY Q-BETA REPLICASE
BIEBRICHER CK, LUCE R EMBO JOURNAL 11 (13) 5129-5135 (1992)

STRUCTURAL CONSENSUS OF RNA TEMPLATES REPLICATED BY Q-BETA REPLICASE
VORONIN LA BIOCHIMIE 74 (5) 491-494 (1992)

REVERSION OF Q-BETA RNA PHAGE MUTANTS BY HOMOLOGOUS RNA RECOMBINATION
AuPALASINGAM K, SHAKLEE PN JOURNAL OF VIROLOGY 66 (4) 2435-2442 (1992)

THE HYPERCYCLE - COUPLING OF RNA AND PROTEIN-BIOSYNTHESIS IN THE INFECTION CYCLE OF AN RNA BACTERIOPHAGE
EIGEN M, BIEBRICHER CK, GEBINOGA M, et al. BIOCHEMISTRY 30 (46) 11005-11018 (1991)

ON THE NATURE OF SPONTANEOUS RNA-SYNTHESIS BY Q-BETA-REPLICASE
CHETVERIN AB, CHETVERINA HV, MUNISHKIN AV JOURNAL OF MOLECULAR BIOLOGY 222 (1) 3-9 (1991)

EFFICIENT TEMPLATES FOR Q-BETA REPLICASE ARE FORMED BY RECOMBINATION FROM HETEROLOGOUS SEQUENCES
MUNISHKIN AV, VORONIN LA, UGAROV VI, et al. JOURNAL OF MOLECULAR BIOLOGY 221 (2) 463-472 (1991)

KINETIC AND THERMODYNAMIC CHARACTERIZATION OF THE INTERACTION BETWEEN Q-BETA-REPLICASE AND TEMPLATE RNA MOLECULES
WERNER M BIOCHEMISTRY 30 (24) 5832-5838 (1991)